Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
CTCF

Cell type

Cell type Class
Blood
Cell type
CD8+ T cells
NA
NA

Attributes by original data submitter

Sample

source_name
1818760_CD8_CTCF_REP2
cell type
CD8
antibody
CTCF(Millipore, 07-729)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
The ChIP assay were performed as previously described (Cheng et al, 2014, PMCID: PMC4343047) Sequencing libraries were generated using NEBNext UltraII DNA library Prep kit with homemade adaptors

Sequencing Platform

instrument_model
Illumina HiSeq 4000

hg38

Number of total reads
55661973
Reads aligned (%)
94.5
Duplicates removed (%)
17.9
Number of peaks
19130 (qval < 1E-05)

hg19

Number of total reads
55661973
Reads aligned (%)
93.8
Duplicates removed (%)
19.3
Number of peaks
19086 (qval < 1E-05)

Base call quality data from DBCLS SRA